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CN09_24070 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24070" - Plasmid stabilization protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24070Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)    
Predicted Functional Partners:
CN09_31795
Acetoacetyl-CoA reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
              0.700
CN09_24065
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
              0.578
CN09_24090
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.530
CN09_24060
Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
              0.529
CN09_25200
Cobalt transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
          0.421
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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