CN09_24080 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_24080

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)

Predicted Functional Partners:

CN09_04180

0.744

CN09_22080

0.722

CN09_06920

0.709

CN09_32480

0.702

CN09_01670

0.687

CN09_26475

0.686

CN09_24235

0.674

CN09_27500

0.658

glgB

0.653

CN09_29850

0.644

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01670	CN09_24080	CN09_01670	CN09_24080	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 13 family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.687
CN09_01670	glgB	CN09_01670	CN09_01690	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 13 family	1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily	0.998
CN09_04180	CN09_06920	CN09_04180	CN09_06920	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.645
CN09_04180	CN09_22080	CN09_04180	CN09_22080	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.721
CN09_04180	CN09_24080	CN09_04180	CN09_24080	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_04180	CN09_26475	CN09_04180	CN09_26475	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.426
CN09_04180	CN09_27500	CN09_04180	CN09_27500	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.474
CN09_06920	CN09_04180	CN09_06920	CN09_04180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.645
CN09_06920	CN09_22080	CN09_06920	CN09_22080	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.626
CN09_06920	CN09_24080	CN09_06920	CN09_24080	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.709
CN09_06920	CN09_26475	CN09_06920	CN09_26475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.562
CN09_06920	CN09_27500	CN09_06920	CN09_27500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_06920	CN09_29850	CN09_06920	CN09_29850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.600
CN09_06920	CN09_32480	CN09_06920	CN09_32480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.567
CN09_22080	CN09_04180	CN09_22080	CN09_04180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.721
CN09_22080	CN09_06920	CN09_22080	CN09_06920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.626
CN09_22080	CN09_24080	CN09_22080	CN09_24080	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.722
CN09_22080	CN09_26475	CN09_22080	CN09_26475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.400
CN09_22080	CN09_27500	CN09_22080	CN09_27500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_22080	CN09_29850	CN09_22080	CN09_29850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.464

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