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CN09_24175 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24175" - ArsR family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_24175ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)    
Predicted Functional Partners:
CN09_24180
Alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
          0.957
CN09_24195
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
          0.715
CN09_24185
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (632 aa)
 
          0.701
CN09_23820
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (488 aa)
 
          0.674
CN09_26190
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (643 aa)
 
          0.621
CN09_24205
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (268 aa)
 
          0.577
CN09_03320
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
          0.568
CN09_23845
Alpha-galactosidase; Catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method- Protein Homology (456 aa)
 
          0.552
CN09_24190
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
          0.526
CN09_24170
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
              0.519
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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