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CN09_24205 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24205" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24205ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (268 aa)    
Predicted Functional Partners:
CN09_24195
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.990
CN09_24190
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
  0.989
CN09_24200
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (329 aa)
 
 
0.970
CN09_24185
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (632 aa)
 
 
  0.956
CN09_24180
Alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
          0.837
CN09_24175
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
          0.577
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components (505 aa)
 
 
 
  0.479
cysS
Cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family (463 aa)
 
          0.462
CN09_31445
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (641 aa)
 
 
0.456
CN09_33290
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
 
  0.455
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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