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CN09_24245 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24245" - Serine kinase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
CN09_24245Serine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (426 aa)    
Predicted Functional Partners:
CN09_24240
Aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
   
  0.990
CN09_24250
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the hyi family (260 aa)
 
        0.943
CN09_24255
3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
   
  0.935
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
          0.913
CN09_21175
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
 
          0.716
CN09_02760
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
 
          0.691
CN09_24260
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (438 aa)
 
     
  0.689
CN09_24265
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
 
          0.667
CN09_25130
Semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
          0.564
CN09_25140
Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the RuBisCO large chain family (419 aa)
 
          0.505
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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