STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24455Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (140 aa)    
Predicted Functional Partners:
CN09_16235
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.680
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination
 
     0.666
CN09_10645
DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.639
CN09_27555
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.631
CN09_17775
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.614
CN09_04330
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.594
CN09_24460
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.576
CN09_11025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.565
CN09_28440
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.515
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily
 
     0.507
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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