STRINGSTRING
CN09_24500 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24500" - Endonuclease DDE in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24500Endonuclease DDE; Derived by automated computational analysis using gene prediction method- Protein Homology (368 aa)    
Predicted Functional Partners:
CN09_33000
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (371 aa)
 
     
  0.701
CN09_22625
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
 
     
  0.590
CN09_00520
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
 
     
  0.566
CN09_33005
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (114 aa)
 
     
  0.563
CN09_12885
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.558
CN09_24495
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
              0.557
CN09_32200
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
 
     
  0.527
CN09_19300
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)
 
          0.506
CN09_25960
DNA polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
 
          0.505
CN09_19315
Serine recombinase; Derived by automated computational analysis using gene prediction method- Protein Homology (689 aa)
 
     
  0.501
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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