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CN09_24560 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24560" - Cellobiosyl-diphosphoprenyl alpha-mannosyltransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24560Cellobiosyl-diphosphoprenyl alpha-mannosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (384 aa)    
Predicted Functional Partners:
CN09_24525
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (578 aa)
 
   
  0.840
CN09_24555
1,3-beta-glucanase; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
     
  0.823
CN09_24520
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (679 aa)
 
 
  0.816
CN09_24545
FAD-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
 
   
  0.816
CN09_24540
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (655 aa)
 
   
  0.813
CN09_24530
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
   
  0.780
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology (783 aa)
 
   
  0.764
CN09_24535
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (480 aa)
 
   
  0.764
CN09_24550
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (360 aa)
   
          0.761
CN09_24515
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)
 
     
  0.753
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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