CN09_24610 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_24610

Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology (353 aa)

Predicted Functional Partners:

CN09_24605

0.759

CN09_24650

0.684

CN09_24640

0.653

CN09_24630

0.565

CN09_24615

0.564

CN09_24635

0.564

CN09_24625

0.564

CN09_24620

0.564

CN09_24645

0.514

CN09_24600

0.448

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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node1	node2	node1 annotation	node2 annotation	score
CN09_24600	CN09_24605	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.549
CN09_24600	CN09_24610	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.448
CN09_24600	CN09_24640	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.481
CN09_24600	CN09_24650	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.549
CN09_24605	CN09_24600	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.549
CN09_24605	CN09_24610	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_24605	CN09_24615	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.510
CN09_24605	CN09_24620	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.508
CN09_24605	CN09_24625	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.509
CN09_24605	CN09_24630	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.509
CN09_24605	CN09_24635	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.509
CN09_24605	CN09_24640	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.506
CN09_24605	CN09_24645	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.571
CN09_24605	CN09_24650	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.559
CN09_24610	CN09_24600	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.448
CN09_24610	CN09_24605	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_24610	CN09_24615	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.564
CN09_24610	CN09_24620	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.564
CN09_24610	CN09_24625	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.564
CN09_24610	CN09_24630	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.565