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CN09_24670 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24670" - Peptide ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
CN09_24670Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)    
Predicted Functional Partners:
CN09_24665
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
 
  0.978
CN09_24660
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (568 aa)
 
   
  0.926
CN09_23390
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
  0.796
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
  0.774
CN09_26440
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
  0.759
CN09_22905
Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
  0.739
CN09_13570
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
  0.736
CN09_33465
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
  0.734
CN09_30220
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
  0.729
CN09_24715
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
 
  0.727
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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