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CN09_24675 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24675" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_24675Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)    
Predicted Functional Partners:
CN09_22985
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.780
CN09_00885
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
          0.768
CN09_23530
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
   
          0.763
CN09_12750
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
          0.761
CN09_26530
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.755
CN09_25710
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
   
          0.704
CN09_24680
4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (449 aa)
         
  0.686
CN09_24685
Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
              0.674
CN09_00510
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
   
          0.603
CN09_32680
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
     
  0.536
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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