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CN09_24685 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24685" - Aminotransferase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24685Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)    
Predicted Functional Partners:
CN09_24680
4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (449 aa)
     
  0.997
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.860
CN09_31500
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.724
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
              0.723
CN09_30880
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (897 aa)
              0.718
CN09_24675
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
              0.674
CN09_20625
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (406 aa)
   
   
  0.657
CN09_24710
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
              0.604
CN09_24695
Glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (475 aa)
              0.570
CN09_24700
Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (450 aa)
            0.563
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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