STRINGSTRING
CN09_24805 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24805" - NADPH:quinone oxidoreductase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24805NADPH-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (325 aa)    
Predicted Functional Partners:
CN09_24800
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
         
  0.807
CN09_01665
Nodulation protein N; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
       
  0.756
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the LeuD family. LeuD type 1 subfamily (202 aa)
              0.714
CN09_12375
Asparaginase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
              0.698
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the aconitase/IPM isomerase family. LeuC type 1 subfamily (469 aa)
              0.443
CN09_32285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (367 aa)
 
     
  0.422
CN09_14010
NADPH-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
       
0.414
CN09_12180
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
   
  0.405
sseA
3-mercaptopyruvate sulfurtransferase; Catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.402
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
   
   
  0.401
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (12%) [HD]