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CN09_24860 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24860" - Amino acid ABC transporter in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_24860Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)    
Predicted Functional Partners:
CN09_24855
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
   
  0.977
CN09_24850
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)
 
   
  0.975
CN09_24845
Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
 
 
  0.906
CN09_24840
Protein involved in propionate catabolism; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
 
          0.862
CN09_24835
Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (432 aa)
         
  0.684
CN09_31285
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
 
   
  0.549
CN09_31685
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
 
   
  0.544
CN09_30995
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)
 
   
  0.534
CN09_05255
Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
   
  0.519
CN09_31290
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
 
   
  0.515
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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