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CN09_24975 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24975" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_24975ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)    
Predicted Functional Partners:
CN09_24980
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
  0.975
CN09_24970
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (543 aa)
 
 
  0.959
CN09_24985
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (529 aa)
   
  0.931
CN09_23265
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
  0.845
CN09_24960
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (526 aa)
   
  0.817
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine (496 aa)
 
          0.802
CN09_23260
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (517 aa)
   
  0.795
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (685 aa)
 
          0.777
CN09_25325
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
  0.773
CN09_24955
Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (667 aa)
 
          0.730
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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