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CN09_24980 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24980" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_24980ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)    
Predicted Functional Partners:
CN09_24975
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
  0.975
CN09_24970
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (543 aa)
 
 
 
  0.955
CN09_24985
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (529 aa)
 
  0.929
CN09_23270
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
  0.845
CN09_25320
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
 
  0.842
CN09_24960
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (526 aa)
 
  0.822
CN09_23260
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (517 aa)
 
  0.805
CN09_20615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
  0.755
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine (496 aa)
 
          0.748
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (685 aa)
 
     
  0.727
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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