STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25015AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (330 aa)    
Predicted Functional Partners:
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine
 
     0.885
CN09_25010
NADPH dependend quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.831
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.801
CN09_24990
Catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.728
CN09_24985
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.706
CN09_25000
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.680
CN09_24975
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.611
CN09_24980
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.562
CN09_24955
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.553
CN09_04555
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.504
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (13%) [HD]