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CN09_25070 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25070" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25070Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (504 aa)    
Predicted Functional Partners:
CN09_25085
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (415 aa)
 
          0.887
CN09_25075
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.825
CN09_25080
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
          0.814
CN09_25065
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (354 aa)
              0.782
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (375 aa)
         
  0.693
CN09_07225
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
         
  0.679
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family (626 aa)
              0.652
CN09_16495
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
              0.652
CN09_07310
DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
              0.652
CN09_25120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
 
          0.647
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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