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CN09_25085 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25085" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25085ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (415 aa)    
Predicted Functional Partners:
CN09_25070
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (504 aa)
 
          0.887
CN09_25080
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
 
  0.842
CN09_25075
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
 
 
  0.822
CN09_25120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
 
          0.690
CN09_25100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (627 aa)
 
          0.659
CN09_25095
With DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
              0.618
CN09_25090
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
              0.615
CN09_25105
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
     
  0.576
CN09_25065
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (354 aa)
     
 
  0.549
CN09_25125
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
     
  0.525
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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