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CN09_25125 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25125" - LacI family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_25125LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)    
Predicted Functional Partners:
CN09_25110
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (354 aa)
   
  0.941
CN09_25120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
 
          0.925
CN09_25100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (627 aa)
 
          0.915
CN09_25105
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
     
  0.907
CN09_25130
Semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
     
  0.906
CN09_25115
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (516 aa)
 
 
  0.903
CN09_31075
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (350 aa)
   
  0.844
CN09_25140
Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the RuBisCO large chain family (419 aa)
 
          0.825
CN09_25135
Hrp-dependent type III effector protein; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
          0.819
CN09_31085
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
 
          0.809
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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