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CN09_25130 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25130" - Semialdehyde dehydrogenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_25130Semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)    
Predicted Functional Partners:
CN09_03985
Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
   
   
  0.982
CN09_25140
Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the RuBisCO large chain family (419 aa)
 
          0.971
CN09_25135
Hrp-dependent type III effector protein; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
          0.933
CN09_25145
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
 
          0.925
CN09_25125
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
     
  0.906
CN09_25105
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
   
  0.897
CN09_25100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (627 aa)
 
          0.895
CN09_25120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
 
          0.882
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
   
   
  0.832
CN09_31085
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
 
          0.745
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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