STRINGSTRING
CN09_25225 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25225" - ABC transporter permease in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25225ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)    
Predicted Functional Partners:
CN09_25235
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
 
 
  0.992
CN09_25230
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (383 aa)
 
          0.989
CN09_25240
RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (302 aa)
 
 
  0.982
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (651 aa)
   
 
  0.639
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
   
        0.615
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
   
 
  0.614
CN09_34005
Nodulation protein NodT; Derived by automated computational analysis using gene prediction method- Protein Homology (484 aa)
 
 
  0.599
CN09_24930
RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
 
  0.596
CN09_25245
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
 
 
  0.587
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner; Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family (227 aa)
   
 
  0.574
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]