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CN09_25260 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25260" - Peptide ABC transporter in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_25260Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)    
Predicted Functional Partners:
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
  0.804
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
   
  0.772
CN09_25255
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
          0.772
CN09_20615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
   
  0.743
CN09_20610
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.743
CN09_26285
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
  0.738
CN09_31815
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
  0.732
CN09_26280
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
   
  0.719
CN09_33420
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.718
CN09_33415
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
   
  0.716
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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