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CN09_25425 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25425" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_25425Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)    
Predicted Functional Partners:
CN09_25250
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
   
          0.778
CN09_31625
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (531 aa)
         
  0.730
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.582
CN09_25430
Acetone carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)
 
          0.569
CN09_01240
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
   
          0.422
CN09_31920
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
 
 
 
  0.416
CN09_24295
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
   
          0.411
CN09_31945
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
 
          0.407
CN09_00175
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
 
   
  0.400
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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