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CN09_25480 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25480" - Lipopolysaccharide biosynthesis protein in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25480Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)    
Predicted Functional Partners:
CN09_07710
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme; In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family (478 aa)
         
  0.935
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
   
        0.934
CN09_25485
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (453 aa)
 
     
  0.934
CN09_25490
Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (709 aa)
 
          0.914
CN09_25495
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (476 aa)
 
          0.886
CN09_25450
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (772 aa)
 
     
  0.794
CN09_23590
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
          0.774
CN09_30500
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (477 aa)
 
          0.762
CN09_33545
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
          0.761
CN09_16040
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
 
          0.746
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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