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CN09_25515 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25515" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25515Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)    
Predicted Functional Partners:
CN09_25525
FkbM family methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
 
      0.803
CN09_25520
Sugar transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
          0.774
CN09_25450
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (772 aa)
   
          0.716
CN09_25430
Acetone carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)
 
          0.698
CN09_25460
GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)
 
     
  0.674
CN09_25480
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
   
          0.672
CN09_16910
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (606 aa)
 
          0.657
CN09_30620
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
   
          0.653
CN09_05765
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (614 aa)
   
          0.645
CN09_25445
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (396 aa)
 
          0.636
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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