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CN09_25565 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25565" - Agmatinase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25565Agmatinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the arginase family (349 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
              0.773
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family (1234 aa)
   
   
  0.772
CN09_10185
Agmatinase; Catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the arginase family (317 aa)
 
     
0.760
CN09_22345
Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
              0.725
CN09_22340
Lipid kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
              0.725
CN09_25570
Aspartate/tyrosine/aromatic aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
   
   
  0.663
CN09_21695
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
         
  0.623
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.588
CN09_22335
Lipid kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
              0.457
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
         
  0.415
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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