CN09_25670 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_25670

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (419 aa)

Predicted Functional Partners:

CN09_25660

0.974

CN09_25680

0.956

CN09_25665

0.935

CN09_25675

0.869

CN09_25655

0.772

CN09_23475

0.729

CN09_21150

0.651

CN09_13645

0.587

CN09_13655

0.513

CN09_25685

0.472

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_13645	CN09_13655	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.952
CN09_13645	CN09_21150	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.824
CN09_13645	CN09_25655	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	0.758
CN09_13645	CN09_25660	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.881
CN09_13645	CN09_25670	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.587
CN09_13655	CN09_13645	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.952
CN09_13655	CN09_21150	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.411
CN09_13655	CN09_25660	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.501
CN09_13655	CN09_25665	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.617
CN09_13655	CN09_25670	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.513
CN09_21150	CN09_13645	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.824
CN09_21150	CN09_13655	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.411
CN09_21150	CN09_25655	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	0.649
CN09_21150	CN09_25665	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.780
CN09_21150	CN09_25670	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.651
CN09_23475	CN09_25670	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.729
CN09_25655	CN09_13645	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.758
CN09_25655	CN09_21150	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.649
CN09_25655	CN09_25660	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.967
CN09_25655	CN09_25665	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972