CN09_25685 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_25685

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (84 aa)

Predicted Functional Partners:

CN09_34260

0.718

CN09_09780

0.684

CN09_03715

0.634

CN09_24235

0.585

CN09_08500

0.581

CN09_29745

0.573

CN09_25680

0.558

CN09_25675

0.558

CN09_14780

0.550

CN09_13590

0.531

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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node1	node2	node1 annotation	node2 annotation	score
CN09_03715	CN09_08500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.701
CN09_03715	CN09_09780	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.677
CN09_03715	CN09_13590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.566
CN09_03715	CN09_14780	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.521
CN09_03715	CN09_25685	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.634
CN09_03715	CN09_34260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.643
CN09_08500	CN09_03715	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.701
CN09_08500	CN09_09780	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.597
CN09_08500	CN09_13590	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.684
CN09_08500	CN09_14780	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.588
CN09_08500	CN09_25685	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.581
CN09_08500	CN09_34260	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.704
CN09_09780	CN09_03715	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.677
CN09_09780	CN09_08500	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.597
CN09_09780	CN09_13590	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.462
CN09_09780	CN09_14780	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.507
CN09_09780	CN09_24235	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.559
CN09_09780	CN09_25685	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.684
CN09_09780	CN09_34260	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.718
CN09_13590	CN09_03715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.566