STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25735Asp/Glu/hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology (243 aa)    
Predicted Functional Partners:
CN09_25730
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.933
CN09_25725
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.930
CN09_25720
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.859
CN09_25710
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.849
CN09_13840
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.827
CN09_21505
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.746
CN09_02925
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_05405
Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.661
CN09_25715
Spermidine/putrescine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily
 
     0.646
CN09_03670
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.567
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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