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CN09_25780 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25780" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_25780ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)    
Predicted Functional Partners:
CN09_25785
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
       
0.893
CN09_25775
Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
 
  0.893
CN09_25790
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)
 
     
  0.883
CN09_25765
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
 
          0.860
CN09_26765
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
   
  0.679
CN09_25755
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (449 aa)
 
     
  0.561
CN09_25750
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
 
     
  0.521
CN09_21610
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (363 aa)
 
     
  0.509
CN09_30110
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
     
  0.476
CN09_26760
Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
 
  0.469
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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