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CN09_25815 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25815" - Sugar ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_25815Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)    
Predicted Functional Partners:
CN09_25805
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (355 aa)
 
     
  0.959
CN09_25810
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (493 aa)
 
 
 
  0.771
CN09_29855
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
          0.726
CN09_25820
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
          0.711
CN09_29865
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (340 aa)
 
     
  0.526
CN09_21590
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (550 aa)
 
     
  0.464
CN09_00620
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (894 aa)
 
     
  0.458
CN09_25800
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
              0.456
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
 
          0.445
CN09_00045
Amino acid permease; Derived by automated computational analysis using gene prediction method- Protein Homology (594 aa)
   
          0.442
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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