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CN09_25845 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25845" - Deacetylase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25845Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)    
Predicted Functional Partners:
CN09_25840
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
 
     
  0.999
CN09_25850
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)
              0.726
CN09_20410
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (696 aa)
              0.640
CN09_04180
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
          0.616
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
         
  0.577
CN09_06420
Beta-xylosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 43 family (536 aa)
         
  0.566
CN09_24180
Alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
         
  0.563
CN09_30530
Beta-mannosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 26 family (315 aa)
              0.561
CN09_16265
Sodium-solute symporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family (491 aa)
              0.536
CN09_24080
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
   
          0.532
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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