STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25930FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology (525 aa)    
Predicted Functional Partners:
CN09_25935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.927
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PEP-utilizing enzyme family
     
 0.747
CN09_25430
Acetone carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.562
CN09_17630
Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.538
CN09_30500
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.513
CN09_25910
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.501
CN09_15595
Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.464
CN09_30620
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.463
CN09_26990
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.462
CN09_27910
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.460
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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