STRINGSTRING
CN09_26010 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26010" - Esterase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26010Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)    
Predicted Functional Partners:
CN09_26005
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
     
  0.800
CN09_26015
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
          0.765
CN09_31360
Flavodoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (192 aa)
 
          0.742
CN09_25990
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
          0.720
CN09_25995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
 
          0.629
CN09_22005
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
 
          0.600
CN09_26000
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (156 aa)
 
          0.576
CN09_00440
2,5-didehydrogluconate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
   
  0.495
CN09_22010
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)
 
          0.491
CN09_22015
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
 
          0.482
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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