STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26035TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (209 aa)    
Predicted Functional Partners:
CN09_26030
N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.967
CN09_26040
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
 
     0.955
CN09_26025
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.712
CN09_26045
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.688
CN09_16660
Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.568
CN09_18725
N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.475
CN09_26050
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.474
CN09_04840
N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.462
CN09_26055
Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.459
CN09_18550
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.409
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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