CN09_26050 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_26050

ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)

Predicted Functional Partners:

CN09_26055

0.987

CN09_26045

0.958

CN09_21105

0.927

CN09_05775

0.921

CN09_21100

0.919

CN09_03905

0.917

CN09_05785

0.903

CN09_03915

0.875

polA

0.796

CN09_26040

0.545

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03905	CN09_03915	CN09_03905	CN09_03915	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.998
CN09_03905	CN09_05785	CN09_03905	CN09_05785	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.679
CN09_03905	CN09_21105	CN09_03905	CN09_21105	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.866
CN09_03905	CN09_26045	CN09_03905	CN09_26045	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697
CN09_03905	CN09_26050	CN09_03905	CN09_26050	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.917
CN09_03905	polA	CN09_03905	CN09_13050	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.856
CN09_03915	CN09_03905	CN09_03915	CN09_03905	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.998
CN09_03915	CN09_05775	CN09_03915	CN09_05775	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.838
CN09_03915	CN09_21100	CN09_03915	CN09_21100	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.799
CN09_03915	CN09_21105	CN09_03915	CN09_21105	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.848
CN09_03915	CN09_26050	CN09_03915	CN09_26050	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.875
CN09_03915	CN09_26055	CN09_03915	CN09_26055	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.836
CN09_03915	polA	CN09_03915	CN09_13050	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.836
CN09_05775	CN09_03915	CN09_05775	CN09_03915	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.838
CN09_05775	CN09_05785	CN09_05775	CN09_05785	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.885
CN09_05775	CN09_21105	CN09_05775	CN09_21105	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.872
CN09_05775	CN09_26045	CN09_05775	CN09_26045	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.808
CN09_05775	CN09_26050	CN09_05775	CN09_26050	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.921
CN09_05775	polA	CN09_05775	CN09_13050	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.856
CN09_05785	CN09_03905	CN09_05785	CN09_03905	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.679

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