STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26050ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (295 aa)    
Predicted Functional Partners:
CN09_26055
Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.997
CN09_05775
Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.985
choV
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.984
CN09_21100
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.984
CN09_26045
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.962
CN09_21105
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.935
ccmB
Heme transporter; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
    
  0.927
CN09_05785
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.905
ccmA
Cytochrome c biogenesis protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system
    
  0.901
kdpC
Potassium-transporting atpase subunit c; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex
    
  0.900
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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