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CN09_26065 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26065" - Invasion protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26065Invasion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)    
Predicted Functional Partners:
CN09_26080
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
 
          0.810
CN09_26085
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1557 aa)
 
          0.758
CN09_16825
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
   
          0.668
CN09_25440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
 
     
  0.549
CN09_29570
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (363 aa)
   
          0.549
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1380 aa)
         
  0.542
CN09_11055
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (355 aa)
   
          0.540
CN09_33860
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (199 aa)
   
          0.535
CN09_02500
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (362 aa)
   
          0.535
CN09_33965
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (199 aa)
   
          0.528
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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