STRINGSTRING
CN09_26215 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26215" - Oxidoreductase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26215Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)    
Predicted Functional Partners:
CN09_26245
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
          0.993
CN09_26210
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
 
     
  0.975
CN09_26220
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (66 aa)
              0.888
CN09_26205
Adenine deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family (599 aa)
              0.821
CN09_32835
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
 
     
  0.705
CN09_32255
NADH oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
   
   
  0.696
CN09_26225
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (373 aa)
 
          0.659
CN09_32250
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
   
 
  0.632
CN09_26235
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (347 aa)
 
          0.547
CN09_32570
tRNA-(Guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
 
 
  0.501
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (4%) [HD]