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CN09_26365 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26365" - ABC transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26365ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)    
Predicted Functional Partners:
CN09_26370
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
   
  0.997
CN09_26360
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
   
  0.993
CN09_23120
Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
   
   
  0.745
CN09_26375
Dihydroxy-acid dehydratase; Catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the IlvD/Edd family (578 aa)
              0.727
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.699
CN09_26380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.667
CN09_30400
Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (268 aa)
     
  0.621
CN09_30120
Sulfonate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
     
  0.599
CN09_30125
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
 
   
  0.598
CN09_30115
Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
     
  0.595
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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