STRINGSTRING
CN09_26425 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26425" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26425Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)    
Predicted Functional Partners:
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
              0.906
CN09_26410
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
              0.816
CN09_26400
Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
              0.790
CN09_26385
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (500 aa)
              0.776
CN09_31885
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (229 aa)
   
          0.757
CN09_22985
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.757
CN09_26405
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
              0.755
CN09_33025
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
   
          0.741
CN09_21675
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
   
          0.738
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
     
      0.730
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (11%) [HD]