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CN09_26455 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26455" - Peptide ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26455Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)    
Predicted Functional Partners:
CN09_26440
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
 
  0.955
CN09_26435
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
   
  0.937
CN09_26445
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (288 aa)
   
 
  0.883
CN09_26450
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (322 aa)
     
 
  0.868
CN09_26430
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
          0.715
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
 
  0.629
CN09_19125
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
 
  0.627
CN09_26460
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
              0.625
CN09_19120
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
 
   
  0.624
CN09_33295
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
 
  0.620
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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