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CN09_26460 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26460" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_26460Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)    
Predicted Functional Partners:
CN09_06370
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
   
          0.751
CN09_23480
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
   
     
  0.746
CN09_26455
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)
              0.625
CN09_26450
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (322 aa)
              0.619
CN09_26445
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (288 aa)
              0.619
CN09_26440
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
              0.617
CN09_26435
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
              0.570
CN09_26430
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
         
  0.508
CN09_14720
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway (299 aa)
   
  0.429
CN09_26465
Glcg protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
              0.423
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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