STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26500Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family (290 aa)    
Predicted Functional Partners:
CN09_26490
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.906
CN09_31685
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.898
CN09_26495
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.893
CN09_26485
Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.862
CN09_26505
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.857
CN09_31680
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.838
CN09_31850
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.759
CN09_32150
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.736
CN09_32145
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.713
CN09_31970
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family
  
     0.709
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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