STRINGSTRING
CN09_26535 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26535" - Amidohydrolase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_26535Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (474 aa)    
Predicted Functional Partners:
CN09_26550
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
 
          0.679
CN09_26530
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
 
          0.659
CN09_26545
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
              0.634
CN09_26555
Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
              0.621
CN09_26560
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial solute-binding protein 3 family (285 aa)
 
          0.617
CN09_32720
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
 
      0.489
CN09_32735
Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (595 aa)
 
          0.466
CN09_24840
Protein involved in propionate catabolism; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
 
          0.455
CN09_25760
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
 
      0.445
CN09_22260
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
 
      0.435
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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