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CN09_26665 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26665" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26665Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)    
Predicted Functional Partners:
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
 
     
  0.926
CN09_28010
Succinate dehydrogenase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family (259 aa)
              0.744
CN09_28015
Succinate dehydrogenase flavoprotein subunit; Part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FAD-depe [...] (613 aa)
              0.728
CN09_28025
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
              0.718
CN09_23585
FAD-binding dehydrogenase; Proposed role in polysaccahride synthesis; Derived by automated computational analysis using gene prediction method- Protein Homology (553 aa)
              0.632
CN09_26670
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
              0.595
CN09_26660
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
              0.561
CN09_22350
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
          0.489
CN09_32965
Acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (533 aa)
         
  0.453
CN09_22335
Lipid kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
 
          0.428
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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