STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26745AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (216 aa)    
Predicted Functional Partners:
CN09_26740
MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.812
CN09_26735
Malonyl-coa synthase; Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.716
CN09_21180
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.711
CN09_12750
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.676
CN09_26425
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.666
CN09_26730
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.569
CN09_26750
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.565
CN09_07580
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.533
CN09_22915
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.464
CN09_31920
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.464
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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