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CN09_26825 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26825" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_26825ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (324 aa)    
Predicted Functional Partners:
CN09_26805
3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method- Protein Homology (629 aa)
              0.998
CN09_26815
Branched-chain amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
   
  0.992
CN09_26820
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
   
  0.985
CN09_26835
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
   
  0.965
CN09_26830
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (292 aa)
   
0.956
CN09_03030
LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (300 aa)
   
  0.911
CN09_21295
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (290 aa)
   
  0.899
CN09_24630
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
   
  0.886
CN09_03040
Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
   
  0.877
CN09_24635
Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (238 aa)
   
  0.876
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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