STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26875Dihydrodipicolinate synthetase; Belongs to the DapA family (301 aa)    
Predicted Functional Partners:
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.984
CN09_26905
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.953
CN09_26880
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.841
CN09_26865
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.797
CN09_26860
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family
 
   
 0.788
CN09_22835
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_11880
Hypothetical protein; Belongs to the UPF0260 family
       0.750
CN09_26885
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.716
CN09_26910
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.679
CN09_01035
Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
  
  
 0.671
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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