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CN09_26940 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26940" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26940Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (81 aa)    
Predicted Functional Partners:
CN09_26935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (72 aa)
              0.845
CN09_26930
Cadmium ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (648 aa)
              0.845
CN09_26925
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
              0.845
CN09_26920
Protein HflC; HflC and HflK could regulate a protease (336 aa)
              0.845
CN09_26915
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (688 aa)
              0.845
CN09_26910
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
              0.477
CN09_26905
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (353 aa)
              0.439
CN09_26900
Peptide ABC transporter ATP-binding protein; With OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
              0.439
CN09_26895
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (335 aa)
              0.439
CN09_26890
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
              0.439
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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